PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462895058
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 236aa    MW: 26582.5 Da    PI: 9.729
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462895058genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.61.7e-16136226199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                f+k++++s+v +  +l lp  f+++++ k  ++  +tl de+g++++ ++    ++++  l++GW +F+ ++g+++gD  vF+l++ ++f  +v+++r+
  462895058 136 FVKAMLHSHVVRGFWLGLPSYFCDTYMPK--QDSIITLVDEKGEEFDTNY--LAYKKG--LSGGWAGFALSHGIRDGDATVFQLIKPTTF--KVHIIRA 226
                89************************744..5669***************..555555..9***********************986777..9999885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-19127226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-23129225IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-24134225No hitNo description
PROSITE profilePS5086312.139136227IPR003340B3 DNA binding domain
PfamPF023629.8E-15136226IPR003340B3 DNA binding domain
SMARTSM010192.2E-17136227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGVVAEQGMS AYEAARERTV QENKRKIEEL NLYHLSAAIK APKTPSPMKQ KRRRIIDAAV  60
VAPSPIRRSR RLAKLPEVKY AELGPHTSER MTRSPRKPTD SIYLARYGSI SMKARLEATR  120
KAEELESQMD PEIPSFVKAM LHSHVVRGFW LGLPSYFCDT YMPKQDSIIT LVDEKGEEFD  180
TNYLAYKKGL SGGWAGFALS HGIRDGDATV FQLIKPTTFK VHIIRAAIDD DSEVAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15054KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645408.11e-142PREDICTED: hypothetical protein isoform X1
SwissprotQ10QS91e-139Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLC4J9031e-142C4J903_MAIZE; Uncharacterized protein
STRINGSi037266m1e-141(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-53B3 family protein